Hmm the link to that patent is pretty interesting. I skipped down to where I found the part about keeping the engine above 3000 rpm for 20 min as I don't have the time to read the entire thing, so I may have missed something.
With that said, here are my thoughts:
1. If the engine just needs to be above 3000 rpm, cruising in 6th at freeway speeds is what, 3100-3200? I would be interested to see what the valves look like on a car that has a long commute. Theoretically, if you have a 30-40 minute commute on the freeway, your valves should be fine then, correct?
2. What do the valves look like on the tuning companies (APR, UNI, GIAC, REVO) race/shop cars? Those probably see more high heat than any of our cars that we drive to/from work and push the go pedal on the on ramps. When on the track, the rpm is almost always (I would imagine) above 3000 rpm to stay in the power. Their valves should be spotless, right?
3. Assuming I am reading the patent correctly, it was filed in 2002 and published in 2005. Therefore, VW has known about these methods (and felt strongly enough to file a patent) for 11 years. If it really works, why haven't they put it in the car manual? They have an engine break in procedure in the manual, why not this if for nothing more than to cover their butt when someone wants their valves cleaned under warranty? All they would have to say is "your manual says to drive in this manner and the valves will be fine, clearly you didn't." Maybe if they put that in the manual and made the issue well known, they fear the consumer would see their product as inferior, thus not purchasing the car. If I were the average consumer (not on car forums/know about direct injection issues), I probably wouldn't know about carbon build up unless the dealer told me to drive a certain way before taking delivery of the car, or I took it in for service and the tech told me the valves need cleaned.
Obviously, I am being a bit of a skeptic, but in my opinion, those are valid arguments and I would love to see the first two proven wrong. Just because there is a patent, doesn't mean it is the solution.